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Publications

  • 2022-2019

      2022

      1. Wu, X.*, Wang, X., Chen, W., Liu, X., Lin, Y., Wang, F., Liu, L., Meng, Y.* (2022). A microRNA-microRNA crosstalk network inferred from genome-wide single nucleotide polymorphism variants in natural populations of Arabidopsis thaliana. Frontiers in plant science, 13:958520. doi: 10.3389/fpls.2022.958520. [Link]

      2. Pei, S., Liu, Y., Li, W., Krichilsky, B., Dai, S., Wang, Y.,..., Pei, Z.M.*, Yuan, F.* (2022). OSCA1 is an osmotic specific sensor: a method to distinguish Ca(2+) -mediated osmotic and ionic perception. New Phytologist, 235(4):1665-1678. doi: 10.1111/nph.18217 [Link]

      3. Wu, X.*, Yuan, F., Wang, X., Zhu, S., and Pei, Z. M.* (2022). Evolution of osmosensing OSCA1 Ca(2+) channel family coincident with plant transition from water to land. The Plant Genome, e20198. doi: 10.1002/tpg2.20198. [Link]

      2020

      1. Wu, F., Chi, Y., Jiang, Z., Xu, Y., Xie, L., Huang, F., Wan, D., Ni, J., Yuan, F., Wu, X., Zhang, Y., Wang, L., Ye, R., Byeon, B., Wang, W., Zhang, S., Sima, M., Chen, S., Zhu, M., Pei, J., Johnson, D.M., Zhu, S., Cao, X., Pei, C., Zai, Z., Liu, Y., Liu, T., Swift, G.B., Zhang, W., Yu, M., Hu, Z., Siedow, J.N., Chen, X., and Pei, Z.M.* (2020) Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis. Nature, 578(7796), 577-581. [Link]

      2019

      1. Jiang, Z., Zhou, X., Tao, M., Yuan, F., Liu, L., Wu, F., Wu, X., Xiang, Y., Niu, Y., Liu, F., Li, C., Ye, R., Byeon, B., Xue, Y., Zhao, H., Wang, H.N., Crawford, B.M., Johnson, D.M., Hu, C., Pei, C., Zhou, W., Swift, G.B., Zhang, H., Vo-Dinh, T., Hu, Z., Siedow, J.N., and Pei, Z.M.* (2019) Plant cell-surface GIPC sphingolipids sense salt to trigger Ca(2+) influx. Nature, 572(7769): 341-346. [Link]

      2. Parvathaneni R.K., Spiekerman J.J., Zhou H., Wu X. and Devos K.M.* (2019) Structural Characterization of ABCB1, the Gene Underlying the d2 Dwarf Phenotype in Pearl Millet, Cenchrus americanus (L.) Morrone. G3: GENES, GENOMES, https://doi.org/10.1534/g3.118.200846. [Full text]

      3. Teng Y.*, Liang Y., Wang M. Mai H. and Ke L. (2019) Nitrate Transporter 1.1 is involved in regulating flowering time via transcriptional regulation of FLOWERING LOCUS C in Arabidopsis thaliana. Plant Science, 284:30-36. [Link]

  • 2018-2015

      2018

      1. Wang M. and Teng Y.* (2018) Genome-wide identification and analysis of MICU genes in land plants and their potential role in calcium stress. Gene, 670:174-181. [Link]

      2. Liu L., Jiang Z., Zhang S., Zhao H., Yang W., Siedow J.N. and Pei Z.M.* (2018) Both NaCl and H2O2 Long-Term Stresses Affect Basal Cytosolic Ca2+ Levels but Only NaCl Alters Cytosolic Ca2+ Signatures in Arabidopsis. Frontiers in Plant Science, 9:1390. [Full text]

      2017

      1. Wu, X.*, Wu, F.H., Wu, Q., Zhang, S., Chen, S. and Sima, M. (2017) Phylogenetic and Molecular Evolutionary Analysis of Mitophagy Receptors under Hypoxic Conditions. Frontiers in physiology, 8:539. [Full Text]

      2. 徐媛媛, 俞翰炳, 吴飞华, 吴晓梅*. 基因组时代林木抗病分子机理研究的新进展. 中国生物工程杂志, 2017, 37(6):114-123. [Full Text]

      3. Yibo Teng*, Haoqiang Cui, Mengyun Wang and Xunyan Liu (2017) Nitrate Reductase is regulated by CIRCADIAN CLOCK-ASSOCIATED1 in Arabidopsis thaliana. Plant and Soil, doi:10.1007/s11104-017-3208-y.

      4. Xiaoqiang Cao, Zhonghao Jiang, Yanyan Yi, Yi Yang, Liping Ke, Zhen-Ming Pei, Shan Zhu* (2017) Biotic and Abiotic Stresses Activate Different Ca 2+ Permeable Channels in Arabidopsis, Frontiers in Plant Science, 8:83 [Full Text]

      2016

      1. Pang, E.*, Wu, X., and Lin, K. (2016) Different evolutionary patterns of SNPs between domains and unassigned regions in human protein-coding sequences. Molecular genetics and genomics, DOI:10.1007/s00438-016-1170-7. [Full Text]

      2015

      1. Liu X., Cui H., Li A., Zhang M., and Teng Y.* (2015) The nitrate transporter NRT1.1 is involved in iron deficiency responses in Arabidopsis. Journal of Plant Nutrition and Soil Science, 178(4): 601-608. [Full Text]

  • 2014-2011

      2014

      1. Yuan, F., Yang, H., Xue, Y., Kong, D., Ye, R., Li, C., Zhang, J., Theprungsirikul, L., Shrift, T., Krichilsky, B., Johnson, D.M., Swift, G.B., He, Y., Siedow, J.N. and Pei, Z.M.* (2014) OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis. Nature, 514(7522): 367-361. [Full Text]

      2. Daverdin, G., Bahri, B., Wu, X., Serba, D.D., Tobias, C., Saha, M.C. and Devos, K.M.* (2014) Comparative relationships and chromosome evolution in switchgrass (Panicum virgatum) and its genomic model, foxtail millet (Setaria italica). Bioenergy Research, 8(1):137-151. [Full Text]

      3. Wu, X.*, Wu, F.H., Wang, X., Wang, L., Siedow, J.N., Zhang, W. and Pei, Z.M.* (2014) Molecular evolutionary and structural analysis of the cytosolic DNA sensor cGAS and STING. Nucleic Acids Research, 42(13): 8243-8257. [Full Text]

      4. Ni, J.*, Zhu Z., Wang G., Shen Y., Zhang Y. and Wu P. (2014) Intragenic Suppressor of Osiaa23 Revealed a Conserved Tryptophan Residue Crucial for Protein-Protein Interactions. PLoS One, 9(1): e85358. doi:10.1371/journal.pone.0085358. [Full Text]

      5. Ni, J.*, Shen Y., Zhang Y. and Wu P. (2014) Definition and stabilisation of the quiescent centre in rice roots. Plant Biology, doi:10.1111/p lb.12138. [PubMed]

      6. Ni, J., Shen Y., Zhang Y. and Liu Y.* (2014) Histological characterization of the lateral root primordium development in rice. Botanical Studies,55(1): 42.

      2013

      1. Jiang, Z., Zhu, S., Ye R., Xue Y., Chen A., An Li. and Pei Z.M.* (2013) Relationship between NaCl- and H2O2-induced cytosolic Ca2+ increases in response to stress in Arabidopsis. PLoS One, 8(10): e76130. [Full Text]

      2. Zhu, S., Zhou, X., Wu, X. and Jiang, Z.* (2013) Structure and function of the CBL-CIPK Ca2+-decoding system in plant calcium signaling. Plant Molecular Biology Reporter, 31(6): 1193-1202. [Full Text]

      3. Wu, X.*, Pang, E., Lin, K. and Pei, Z.M. (2013) Improving the measurement of semantic similarity between Gene Ontology terms and gene products: insights from an edge- and IC-based hybrid method. PLoS One, 8(5): e66745. [Full Text]

      4. Parvathaneni, R.K., Jakkula, V., Padi, F.K., Faure, S., Nagarajappa, N., Pontaroli, A.C., Wu, X., Bennetzen, J.L. and Devos, K.M.* (2013) Fine-mapping and identification of a candidate gene underlying the d2 dwarfing phenotype in pearl millet, Cenchrus americanus (L.) Morrone. G3 (Bethesda), 3(3): 563-572. [Full Text]

      2012

      1. Shan Zhu, Qi Zhao, Gaosen Zhang, Zhonghao Jiang, Hongmei Sheng, Huyuan Feng, & Lizhe An (2012) Paracoccus tibetensis sp. nov., isolated from Qinghai-Tibet Plateau permafrost. International journal of systematic and evolutionary microbiology, 63(Pt 5):1902-1905.

      2. Chen J., Wu F.H., Liu T.W., Chen L., Xiao Q., Dong X.J., He J.X., Pei Z.M. and Zheng H.L. (2012) Emissions of nitric oxide from 79 plant species in response to simulated nitrogen deposition. Environ Pollut, 160(1): 192-200.

      3. Wang W.H., Yi X.Q., Han A.D., Liu T.W., Chen J., Wu F.H., Dong X.J., He J.X., Pei Z.M. and Zheng H.L. (2012) Calcium-sensing receptor regulates stomatal closure through hydrogen peroxide and nitric oxide in response to extracellular calcium in Arabidopsis. J Exp Bot, 63(1): 177-190.

      4. Bennetzen, J. L., Schmutz J., Wang H., Percifield R., Hawkins J., Pontaroli A. C., Estep M., Feng L., Vaughn J. N., Grimwood J., Jenkins J., Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X., Mitros T., Triplett J., Yang X., Ye C. Y., Mauro-Herrera M., Wang L., Li P., Sharma M., Sharma R., Ronald P. C., Panaud O., Kellogg E. A., Brutnell T. P., Doust A. N., Tuskan G. A., Rokhsar D., and Devos K. M. (2012) Reference genome sequence of the model plant Setaria. Nature Biotechnology, 30(6): 555-61.

      5. 沈燕霞, 倪君 (2012) 植物根尖生长素信号研究进展. 中国细胞生物学学报 34(9),931-935.

      6. Liu X Y , Yang X, Zhao X, Yang J, Zhang M. (2012) Reduced expression of CTR1 gene modulated by mitochondria causes enhanced ethylene response in cytoplasmic male-sterile Brassica juncea. Physiologia Plantarum, 145: 332-340.

      7. Yang X, Liu X Y , Lv W, Li L, Shi Q, Yang J, Zhang M. (2012) Reduced expression of BjRCE1 gene modulated by nuclear-cytoplasmic incompatibility alters auxin response in cytoplasmic male-sterile Brassica juncea. PloS One, 7: e38821

      8. Ke L, Liu R, Chu B, Yu X, Sun J, Jones B, Pan G, Cheng X, Wang H, Zhu S, Sun Y. (2012) Cell Suspension Culture-Mediated Incorporation of the Rice Bel Gene into Transgenic Cotton. PLoS One, 7(7): e39974.

      9. Wu Xiao-Yun, Ding Hai-Tao, Ke Li-Ping, Xin Yue-Yong, Cheng Xiao-Fei. (2012) Characterization of an acid-resistant glucose 1-dehydrogenase from Bacillus cereus var. mycoides. Romanian Biotechnological Letters, 17(4): 7540-7548

      2011

      1. Li G., Siddiqui H. * , Teng Y. * , Lin R. * , Wan X.Y., Li J., Lau O.S., Ouyang X., Dai M., Wan J., Devlin P.F., Deng X.W., Wang H. (2011). Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Nature Cell Biology 13:616-622 (* Equal contribution)

      2. Chen J.# , Wu F.H.# , Wang W.H., Zheng C.J., Lin G.H., Dong X.J., He J.X., Pei Z.M. and Zheng H.L. (2011). Hydrogen sulphide enhances photosynthesis through promoting chloroplast biogenesis, photosynthetic enzyme expression, and thiol redox modification in Spinacia oleracea seedlings. J Exp Bot 62(13): 4481-4493. #These authors contributed equally to this work.

      3. Ni, J., Wang, G.H., Zhu, Z.X., Zhang, H.H., Wu, Y.R., Wu, P. (2011) OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice. Plant J 68, 433-442.

      4. Chen, J., Liu, Y., Ni, J., Wang, Y., Bai, Y., Shi, J., Gan, J., Wu, Z. and Wu, P. (2011) OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice. Plant Physiol 157, 269-278.